Interestingly, my bench press is better than my squat right now. I would assume that has a lot to do with mobility related issues in my legs, likely also contributing to my overuse injuries running. As I work on mobility, I think I'll dial back the strength component and work in lower weight so I can work on form and a complete range of motion. For a day-to-day structure, I that covers all the different movements, I really like Coach Dos' book Men's Health Power Training.
Here are a few mobility things I like to do: